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Pcnx1 pecanex 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 314288, updated on 2-Nov-2024

Summary

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Official Symbol
Pcnx1provided by RGD
Official Full Name
pecanex 1provided by RGD
Primary source
RGD:1306115
See related
EnsemblRapid:ENSRNOG00000007459 AllianceGenome:RGD:1306115
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Pcnx
Summary
Predicted to be located in membrane. Orthologous to human PCNX1 (pecanex 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 164.6), Lung (RPKM 157.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Pcnx1 in Genome Data Viewer
Location:
6q24
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (107296704..107433576)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (101565461..101702339)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (105611425..105747178)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 9 Neighboring gene uncharacterized LOC102552601 Neighboring gene 60S ribosomal protein L21-like Neighboring gene uncharacterized LOC102552673 Neighboring gene signal-induced proliferation-associated 1 like 1 Neighboring gene uncharacterized LOC134479448 Neighboring gene uncharacterized LOC102552965

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The mammalian gene pecanex 1 is differentially expressed during spermatogenesis. Geisinger A, et al. Biochim Biophys Acta, 2005 Apr 5. PMID 15777640

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. pecanex 1 could play an important role in the testis, related to spermatogenesis.
    Title: The mammalian gene pecanex 1 is differentially expressed during spermatogenesis.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pecanex-like protein 1
Names
pecanex homolog 1
pecanex homolog protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170347.1 → NP_001163818.1  pecanex-like protein 1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000006
    UniProtKB/Swiss-Prot
    E9PSU6
    UniProtKB/TrEMBL
    A0A8I6A512
    Related
    ENSRNOP00000010022.5, ENSRNOT00000010022.8
    Conserved Domains (2) summary
    pfam05041
    Location:1784 → 2008
    Pecanex_C; Pecanex protein (C-terminus)
    cl28033
    Location:323 → 615
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    107296704..107433576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039112295.2 → XP_038968223.1  pecanex-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I6A512
    Related
    ENSRNOP00000087947.2, ENSRNOT00000108585.2
    Conserved Domains (2) summary
    PHA03307
    Location:323 → 615
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1784 → 2010
    Pecanex_C; Pecanex protein (C-terminus)

  2. XM_006240299.5 → XP_006240361.1  pecanex-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006240361.1

    UniProtKB/TrEMBL
    A0A8I6A512, A6JDN9
    Conserved Domains (4) summary
    pfam05041
    Location:1779 → 2003
    Pecanex_C; Pecanex protein (C-terminus)
    pfam12730
    Location:1029 → 1276
    ABC2_membrane_4; ABC-2 family transporter protein
    pfam15772
    Location:429 → 539
    UPF0688; UPF0688 family
    cl11542
    Location:1396 → 1521
    EcsB; Bacterial ABC transporter protein EcsB

  3. XM_039112294.1 → XP_038968222.1  pecanex-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A512
    Conserved Domains (2) summary
    PHA03307
    Location:323 → 615
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1783 → 2009
    Pecanex_C; Pecanex protein (C-terminus)

  4. XM_063261934.1 → XP_063118004.1  pecanex-like protein 1 isoform X3

  5. XM_039112299.2 → XP_038968227.1  pecanex-like protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8I6A512
    Conserved Domains (2) summary
    PHA03307
    Location:323 → 615
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1678 → 1904
    Pecanex_C; Pecanex protein (C-terminus)

  6. XM_006240302.5 → XP_006240364.1  pecanex-like protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8I6A512
    Conserved Domains (4) summary
    pfam05041
    Location:1673 → 1897
    Pecanex_C; Pecanex protein (C-terminus)
    pfam12730
    Location:923 → 1170
    ABC2_membrane_4; ABC-2 family transporter protein
    pfam15772
    Location:429 → 539
    UPF0688; UPF0688 family
    cl11542
    Location:1290 → 1415
    EcsB; Bacterial ABC transporter protein EcsB

  7. XM_039112296.1 → XP_038968224.1  pecanex-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A512
    Conserved Domains (2) summary
    PHA03307
    Location:293 → 585
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1754 → 1980
    Pecanex_C; Pecanex protein (C-terminus)

  8. XM_039112298.1 → XP_038968226.1  pecanex-like protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8I6A512
    Conserved Domains (2) summary
    PHA03307
    Location:267 → 559
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05041
    Location:1728 → 1954
    Pecanex_C; Pecanex protein (C-terminus)

  9. XM_063261935.1 → XP_063118005.1  pecanex-like protein 1 isoform X10

    UniProtKB/TrEMBL
    A6JDP0

  10. XM_039112301.2 → XP_038968229.1  pecanex-like protein 1 isoform X9

    Conserved Domains (1) summary
    pfam05041
    Location:892 → 1118
    Pecanex_C; Pecanex protein (C-terminus)

  11. XM_039112300.2 → XP_038968228.1  pecanex-like protein 1 isoform X9

    Conserved Domains (1) summary
    pfam05041
    Location:892 → 1118
    Pecanex_C; Pecanex protein (C-terminus)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9PSU6.1 GenPept UniProtKB/Swiss-Prot:E9PSU6

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