zgc:63569 zgc:63569 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:63569provided by ZNC
Official Full Name: zgc:63569provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9816
See related: Ensembl:ENSDARG00000103399 AllianceGenome:ZFIN:ZDB-GENE-030131-9816
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: Ctl2; cb39; sb:cb39; slc44a2
Summary: Predicted to enable choline transmembrane transporter activity and ethanolamine transmembrane transporter activity. Predicted to be involved in choline transport; ethanolamine transport; and transmembrane transport. Predicted to be located in mitochondrial outer membrane and plasma membrane. Predicted to be active in membrane. Is expressed in several structures, including digestive system; notochord; otic vesicle; pectoral fin; and sensory system. Orthologous to human SLC44A2 (solute carrier family 44 member 2 (CTL2 blood group)). [provided by Alliance of Genome Resources, Oct 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: Un

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	Unplaced Scaffold	NW_003336720.1 (8790..52851)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_003336720.1 (8790..52851)

NW_003336720.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj99f01.x1 (e-PCR)
- UniSTS:200476

fe37c08.y1 (e-PCR)
- UniSTS:196423

G47436 (e-PCR)
- UniSTS:108214

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables antiporter activity	IEA Inferred from Electronic Annotation more info
enables choline transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables ethanolamine transmembrane transporter activity	ISS Inferred from Sequence or Structural Similarity more info
enables transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in choline transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in ethanolamine transport	ISS Inferred from Sequence or Structural Similarity more info
involved_in transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: choline transporter-like protein 2

Names: solute carrier family 44 member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.