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sap30bp SAP30 binding protein [ Danio rerio (zebrafish) ]

Gene ID: 321738, updated on 27-Mar-2024

Summary

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Official Symbol
sap30bpprovided by ZNC
Official Full Name
SAP30 binding proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-457
See related
Ensembl:ENSDARG00000031261 AllianceGenome:ZFIN:ZDB-GENE-030131-457
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb33d03; zgc:55340; wu:fb33d03
Summary
Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAP30BP (SAP30 binding protein). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See sap30bp in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (13064766..13098183)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (13027061..13060478)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene DENN/MADD domain containing 2Da Neighboring gene uncharacterized LOC101886593 Neighboring gene uncharacterized LOC103911475 Neighboring gene sperm associated antigen 17 Neighboring gene integrin, beta 4 Neighboring gene zgc:194990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Two functional microRNA-126s repress a novel target gene p21-activated kinase 1 to regulate vascular integrity in zebrafish. Zou J, et al. Circ Res, 2011 Jan 21. PMID 21148433
  2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SAP30-binding protein
Names
transcriptional regulator protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199565.2 → NP_955859.2  SAP30-binding protein

    Status: VALIDATED

    Source sequence(s)
    EH435164, EH461164, EH475763, EH492954
    UniProtKB/TrEMBL
    A0A8M1PFG7, F1QJR8
    Related
    ENSDARP00000039877.5, ENSDART00000039878.6
    Conserved Domains (2) summary
    PHA02664
    Location:23 → 97
    PHA02664; hypothetical protein; Provisional
    pfam07818
    Location:116 → 202
    HCNGP; HCNGP-like protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    13064766..13098183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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