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srsf11 serine and arginine rich splicing factor 11 [ Danio rerio (zebrafish) ]

Gene ID: 321886, updated on 2-Nov-2024

Summary

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Official Symbol
srsf11provided by ZNC
Official Full Name
serine and arginine rich splicing factor 11provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-605
See related
Ensembl:ENSDARG00000098574 AllianceGenome:ZFIN:ZDB-GENE-030131-605
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sfrs11; zgc:55515; wu:fb37g02
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be active in nucleoplasm. Orthologous to human SRSF11 (serine and arginine rich splicing factor 11). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See srsf11 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (45388196..45400146)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (45010630..45022580)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene centriolar coiled-coil protein 110 Neighboring gene trafficking protein particle complex subunit 10 Neighboring gene ankyrin repeat domain 13C Neighboring gene son of sevenless homolog 1 (Drosophila) Neighboring gene phospholipase A and acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Ozbudak EM, et al. Proc Natl Acad Sci U S A, 2010 Mar 2. PMID 20160088, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine/arginine-rich splicing factor 11
Names
splicing factor, arginine/serine-rich 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199576.1 → NP_955870.1  serine/arginine-rich splicing factor 11

    See identical proteins and their annotated locations for NP_955870.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044186
    UniProtKB/TrEMBL
    Q803U8
    Related
    ENSDARP00000138275.1, ENSDART00000167826.2
    Conserved Domains (1) summary
    cd12518
    Location:8 → 87
    RRM_SRSF11; RNA recognition motif in serine/arginine-rich splicing factor 11 (SRSF11) and similar proteins

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    45388196..45400146
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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