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exoc1 exocyst complex component 1 [ Danio rerio (zebrafish) ]

Gene ID: 322338, updated on 28-Oct-2024

Summary

Official Symbol
exoc1provided by ZNC
Official Full Name
exocyst complex component 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1057
See related
Ensembl:ENSDARG00000043019 AllianceGenome:ZFIN:ZDB-GENE-030131-1057
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sec3l1; zgc:64145; wu:fb58e03
Summary
Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Orthologous to human EXOC1 (exocyst complex component 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See exoc1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (25853012..25878611, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (25953922..25979512, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885253 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene zgc:153896 Neighboring gene mitotic deacetylase associated SANT domain protein a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within exocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of exocyst IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
exocyst complex component 1
Names
SEC3-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199597.1NP_955891.1  exocyst complex component 1

    See identical proteins and their annotated locations for NP_955891.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054625
    UniProtKB/TrEMBL
    Q7T2A6
    Related
    ENSDARP00000063153.3, ENSDART00000063154.5
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:184869
    Sec3_C; Exocyst complex component Sec3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    25853012..25878611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160558.4XP_005160615.1  exocyst complex component 1 isoform X6

    UniProtKB/TrEMBL
    A0A2R8PY61, A0A8M2B7C5
    Related
    ENSDARP00000144820.1, ENSDART00000184619.1
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:184854
    Sec3_C; Exocyst complex component Sec3
  2. XM_021468363.2XP_021324038.1  exocyst complex component 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PBK9
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:184892
    Sec3_C; Exocyst complex component Sec3
  3. XM_005160557.4XP_005160614.1  exocyst complex component 1 isoform X5

    UniProtKB/TrEMBL
    A0A8M2B7E3
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:190860
    Sec3_C; Exocyst complex component Sec3
  4. XM_005160556.4XP_005160613.1  exocyst complex component 1 isoform X4

    UniProtKB/TrEMBL
    A0A286Y9W9, A0A8M2B7N4
    Related
    ENSDARP00000143958.2, ENSDART00000177333.2
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:190875
    Sec3_C; Exocyst complex component Sec3
  5. XM_021468364.2XP_021324039.1  exocyst complex component 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PH55
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:190883
    Sec3_C; Exocyst complex component Sec3
  6. XM_021468362.2XP_021324037.1  exocyst complex component 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P2G2
    Conserved Domains (2) summary
    cd14683
    Location:3120
    PH-EXOC1; PH-like domain of Exocyst complex component 1
    pfam09763
    Location:190898
    Sec3_C; Exocyst complex component Sec3