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acap3a ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [ Danio rerio (zebrafish) ]

Gene ID: 322991, updated on 28-Oct-2024

Summary

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Official Symbol
acap3aprovided by ZNC
Official Full Name
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1711
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-1711
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb78d08; fb78d09; wu:fb78d08; wu:fb78d09; si:dkey-229p15.5
Summary
Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to be located in endosome membrane. Orthologous to human ACAP3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3). [provided by Alliance of Genome Resources, Oct 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See acap3a in Genome Data Viewer
Location:
chromosome: 23
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (36897919..37025497, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (36766392..36814690, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene homeodomain interacting protein kinase 1a Neighboring gene ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) Neighboring gene P2Y purinoceptor 1 Neighboring gene integrator complex subunit 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    36897919..37025497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068216935.1 → XP_068073036.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3

Nucleotide Protein Strain
Heading Accession and Version

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