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cd99l2 CD99 molecule-like 2 [ Danio rerio (zebrafish) ]

Gene ID: 323266, updated on 12-Sep-2024

Summary

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Official Symbol
cd99l2provided by ZNC
Official Full Name
CD99 molecule-like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1986
See related
Ensembl:ENSDARG00000056722 AllianceGenome:ZFIN:ZDB-GENE-030131-1986
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb969; mic2l1; fb93g04; wu:fb93g04
Summary
Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Is expressed in nervous system; neural plate; pharyngeal arch 3-7 skeleton; tail bud; and trigeminal placode. Orthologous to human CD99L2 (CD99 molecule like 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See cd99l2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (25878553..25895354, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (25607360..25624271, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene myotubularin 1 Neighboring gene myotubularin related protein 1a Neighboring gene uncharacterized LOC108190781 Neighboring gene high mobility group box 3a Neighboring gene arrestin, beta 2b Neighboring gene uncharacterized LOC137496167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Cloning, genomic organization, alternative transcripts and expression analysis of CD99L2, a novel paralog of human CD99, and identification of evolutionary conserved motifs. Suh YH, et al. Gene, 2003 Mar 27. PMID 12706889
  2. In vivo protein trapping produces a functional expression codex of the vertebrate proteome. Clark KJ, et al. Nat Methods, 2011 Jun. PMID 21552255, Free PMC Article
  3. Single cell sequencing of radial glia progeny reveals the diversity of newborn neurons in the adult zebrafish brain. Lange C, et al. Development, 2020 Jan 9. PMID 31908317, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CD99 antigen-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328523.1 → NP_001315452.1  CD99 antigen-like protein 2 isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    BX005022, EH433396, EH459401, EH591607
    UniProtKB/TrEMBL
    A0A0H2UKE9, A0A8M1P513
    Related
    ENSDARP00000073701.4, ENSDART00000079245.5
    Conserved Domains (1) summary
    pfam12301
    Location:39 → 232
    CD99L2; CD99 antigen like protein 2

  2. NM_001328524.1 → NP_001315453.1  CD99 antigen-like protein 2 isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    BX005022, EH433396, EH459401, EH591607
    UniProtKB/Swiss-Prot
    Q6DBW9, Q8QFW9
    Related
    ENSDARP00000073691.6, ENSDART00000079235.7
    Conserved Domains (1) summary
    pfam12301
    Location:39 → 231
    CD99L2; CD99 antigen like protein 2

  3. NM_001328525.1 → NP_001315454.1  CD99 antigen-like protein 2 isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    BX005022, EH433396, EH459401, EH591607
    UniProtKB/TrEMBL
    A0A2R8Q1M7, A0A8M1P3Y8
    Related
    ENSDARP00000147027.1, ENSDART00000187568.1

  4. NM_194369.2 → NP_919350.2  CD99 antigen-like protein 2 isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    BX005022, EH433396, EH459401, EH591607
    UniProtKB/Swiss-Prot
    Q6DBW9
    Related
    ENSDARP00000142717.1, ENSDART00000173505.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    25878553..25895354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005172253.5 → XP_005172310.1  CD99 antigen-like protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A8M2BJM1
    Conserved Domains (1) summary
    pfam12301
    Location:39 → 213
    CD99L2; CD99 antigen like protein 2

  2. XM_005172252.5 → XP_005172309.1  CD99 antigen-like protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A8M2BJJ6
    Conserved Domains (1) summary
    pfam12301
    Location:39 → 230
    CD99L2; CD99 antigen like protein 2

  3. XM_009303031.4 → XP_009301306.1  CD99 antigen-like protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8M3BAU8
    Conserved Domains (1) summary
    pfam12301
    Location:39 → 231
    CD99L2; CD99 antigen like protein 2

  4. XM_009303030.4 → XP_009301305.1  CD99 antigen-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8M3AU10
    Conserved Domains (1) summary
    pfam12301
    Location:86 → 267
    CD99L2; CD99 antigen like protein 2

  5. XM_017356813.3 → XP_017212302.1  CD99 antigen-like protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A8M6Z7M7
    Related
    ENSDARP00000142684.1, ENSDART00000173786.2

  6. XM_009303029.4 → XP_009301304.1  CD99 antigen-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M3B105
    Conserved Domains (1) summary
    pfam12301
    Location:87 → 267
    CD99L2; CD99 antigen like protein 2

  7. XM_009303028.4 → XP_009301303.1  CD99 antigen-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1D5NSB9, A0A8M3B3X2
    Related
    ENSDARP00000142732.1, ENSDART00000173602.2
    Conserved Domains (1) summary
    pfam12301
    Location:87 → 268
    CD99L2; CD99 antigen like protein 2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DBW9.1 GenPept UniProtKB/Swiss-Prot:Q6DBW9

Gene LinkOut

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