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pou2f1b POU class 2 homeobox 1b [ Danio rerio (zebrafish) ]

Gene ID: 323702, updated on 28-Oct-2024

Summary

Official Symbol
pou2f1bprovided by ZNC
Official Full Name
POU class 2 homeobox 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2422
See related
Ensembl:ENSDARG00000007996 AllianceGenome:ZFIN:ZDB-GENE-030131-2422
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc07d06; wu:fc07d06; zgc:158360
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in telencephalon. Orthologous to human POU2F1 (POU class 2 homeobox 1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See pou2f1b in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (34319333..34355548)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (34510148..34546363)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin-like domain containing receptor 2 Neighboring gene glycoprotein A33 (transmembrane), paralog b Neighboring gene uncharacterized LOC137496486 Neighboring gene CD247 antigen like Neighboring gene uncharacterized LOC101887113

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General protein information

Preferred Names
POU domain, class 2, transcription factor 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089329.1NP_001082798.1  POU domain, class 2, transcription factor 1b

    See identical proteins and their annotated locations for NP_001082798.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134808
    UniProtKB/TrEMBL
    A4IFW4
    Related
    ENSDARP00000037034.6, ENSDART00000035522.8
    Conserved Domains (2) summary
    smart00352
    Location:214287
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:321375
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    34319333..34355548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167815.4XP_005167872.1  POU domain, class 2, transcription factor 1b isoform X4

    UniProtKB/TrEMBL
    A0A8M2BFW2
    Conserved Domains (3) summary
    smart00352
    Location:236310
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:340394
    Homeobox; Homeobox domain
    pfam03153
    Location:59226
    TFIIA; Transcription factor IIA, alpha/beta subunit
  2. XM_009304814.3XP_009303089.1  POU domain, class 2, transcription factor 1b isoform X7

    UniProtKB/TrEMBL
    A0A8M3AW75
    Conserved Domains (3) summary
    smart00352
    Location:236310
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:340394
    Homeobox; Homeobox domain
    pfam03153
    Location:59226
    TFIIA; Transcription factor IIA, alpha/beta subunit
  3. XM_005167816.4XP_005167873.1  POU domain, class 2, transcription factor 1b isoform X6

    UniProtKB/TrEMBL
    A0A8M2BF85
    Conserved Domains (3) summary
    smart00352
    Location:236310
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:340393
    Homeobox; Homeobox domain
    pfam03153
    Location:59226
    TFIIA; Transcription factor IIA, alpha/beta subunit
  4. XM_017357651.3XP_017213140.1  POU domain, class 2, transcription factor 1b isoform X8

    UniProtKB/TrEMBL
    A0A8M6Z2I0
  5. XM_068223294.1XP_068079395.1  POU domain, class 2, transcription factor 1b isoform X1

  6. XM_068223297.1XP_068079398.1  POU domain, class 2, transcription factor 1b isoform X5

  7. XM_068223296.1XP_068079397.1  POU domain, class 2, transcription factor 1b isoform X3

  8. XM_068223299.1XP_068079400.1  POU domain, class 2, transcription factor 1b isoform X10

  9. XM_068223298.1XP_068079399.1  POU domain, class 2, transcription factor 1b isoform X9

  10. XM_068223295.1XP_068079396.1  POU domain, class 2, transcription factor 1b isoform X2