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scyl3 SCY1-like, kinase-like 3 [ Danio rerio (zebrafish) ]

Gene ID: 323839, updated on 2-Nov-2024

Summary

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Official Symbol
scyl3provided by ZNC
Official Full Name
SCY1-like, kinase-like 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2559
See related
Ensembl:ENSDARG00000027046 AllianceGenome:ZFIN:ZDB-GENE-030131-2559
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:55575; wu:fc11d06; wu:faa95c04
Summary
Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SCYL3 (SCY1 like pseudokinase 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See scyl3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (34012950..34028969, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (34110071..34126090, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 3a, tandem duplicate 1 Neighboring gene fignl1 interacting regulator of recombination and mitosis Neighboring gene proteoglycan 4b Neighboring gene translocated promoter region b, nuclear basket protein Neighboring gene phosducin b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Global identification of SMAD2 target genes reveals a role for multiple co-regulatory factors in zebrafish early gastrulas. Liu Z, et al. J Biol Chem, 2011 Aug 12. PMID 21669877, Free PMC Article
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein phosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein-associating with the carboxyl-terminal domain of ezrin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199657.1 → NP_955951.1  protein-associating with the carboxyl-terminal domain of ezrin

    See identical proteins and their annotated locations for NP_955951.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044195
    UniProtKB/TrEMBL
    Q803U0
    Related
    ENSDARP00000033868.5, ENSDART00000033817.7
    Conserved Domains (2) summary
    sd00044
    Location:339 → 367
    HEAT; HEAT repeat [structural motif]
    cl21453
    Location:32 → 247
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    34012950..34028969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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