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snupn snurportin 1 [ Danio rerio (zebrafish) ]

Gene ID: 324743, updated on 12-Sep-2024

Summary

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Official Symbol
snupnprovided by ZNC
Official Full Name
snurportin 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3464
See related
Ensembl:ENSDARG00000008395 AllianceGenome:ZFIN:ZDB-GENE-030131-3464
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rnut1; zgc:77819; wu:fc41a03
Summary
Predicted to enable RNA binding activity and nuclear import signal receptor activity. Predicted to be involved in protein import into nucleus and snRNA import into nucleus. Predicted to be located in cytoplasm and nucleus. Orthologous to human SNUPN (snurportin 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See snupn in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (6435699..6447829, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (6308297..6320391, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene SIN3 transcription regulator family member Aa Neighboring gene protein tyrosine phosphatase non-receptor type 9a Neighboring gene sorting nexin 33 Neighboring gene uncharacterized LOC137489324

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within snRNA import into nucleus IEA
Inferred from Electronic Annotation
more info
  
involved_in snRNA import into nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
snurportin-1
Names
RNA, U transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199694.1 → NP_955988.1  snurportin-1

    See identical proteins and their annotated locations for NP_955988.1

    Status: PROVISIONAL

    Source sequence(s)
    BC062858
    UniProtKB/TrEMBL
    A0A8M1PED2, Q6P5J9
    Related
    ENSDARP00000016305.7, ENSDART00000012820.8
    Conserved Domains (2) summary
    cd09232
    Location:108 → 292
    Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
    pfam11538
    Location:25 → 64
    Snurportin1; Snurportin1

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    6435699..6447829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470452.2 → XP_021326127.1  snurportin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9P6D1
    Conserved Domains (2) summary
    cd09232
    Location:108 → 283
    Snurportin-1_C; C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1
    pfam11538
    Location:25 → 64
    Snurportin1
Nucleotide Protein Strain
Heading Accession and Version

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