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si:dkey-260j18.2 si:dkey-260j18.2 [ Danio rerio (zebrafish) ]

Gene ID: 325231, updated on 18-Sep-2024

Summary

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Official Symbol
si:dkey-260j18.2provided by ZNC
Official Full Name
si:dkey-260j18.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3956
See related
Ensembl:ENSDARG00000101942 AllianceGenome:ZFIN:ZDB-GENE-030131-3956
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc60g01; wu:fc60g01
Orthologs
all
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Genomic context

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See si:dkey-260j18.2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (14632757..14642187, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (14696800..14706230, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene F-box protein 46 Neighboring gene solute carrier family 5 member 2 Neighboring gene seryl-tRNA synthetase 2, mitochondrial Neighboring gene prolyl 4-hydroxylase, alpha polypeptide III

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin-like ligase-substrate adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Cul3-RING ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC325231

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079948.2 → NP_001073417.2  uncharacterized protein LOC325231

    See identical proteins and their annotated locations for NP_001073417.2

    Status: PREDICTED

    Source sequence(s)
    BC152491
    UniProtKB/TrEMBL
    A7MD61
    Related
    ENSDARP00000130659.1, ENSDART00000164166.2
    Conserved Domains (6) summary
    smart00612
    Location:394 → 436
    Kelch; Kelch domain
    smart00225
    Location:65 → 161
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:166 → 262
    BACK; BTB And C-terminal Kelch
    sd00038
    Location:337 → 377
    Kelch; KELCH repeat [structural motif]
    pfam00651
    Location:54 → 157
    BTB; BTB/POZ domain
    pfam01344
    Location:335 → 371
    Kelch_1; Kelch motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    14632757..14642187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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