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chchd3b coiled-coil-helix-coiled-coil-helix domain containing 3b [ Danio rerio (zebrafish) ]

Gene ID: 325751, updated on 27-Mar-2024

Summary

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Official Symbol
chchd3bprovided by ZNC
Official Full Name
coiled-coil-helix-coiled-coil-helix domain containing 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4476
See related
Ensembl:ENSDARG00000034933 AllianceGenome:ZFIN:ZDB-GENE-030131-4476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
mic19b; fd08g06; wu:fd08g06; zgc:162618
Summary
Predicted to be involved in inner mitochondrial membrane organization. Predicted to be part of MICOS complex. Orthologous to human CHCHD3 (coiled-coil-helix-coiled-coil-helix domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See chchd3b in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (3357939..3369329)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (3232567..3243585)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene lactate dehydrogenase Bb Neighboring gene golgi transport 1Bb Neighboring gene solute carrier family 35 member B4 Neighboring gene G protein-coupled receptor 22b Neighboring gene uncharacterized LOC103909803

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish orthologue of the human hepatocerebral disease gene MPV17 plays pleiotropic roles in mitochondria. Martorano L, et al. Dis Model Mech, 2019 Mar 14. PMID 30833296, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in inner mitochondrial membrane organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of MICOS complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of MICOS complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil-helix-coiled-coil-helix domain containing 3b; uncharacterized protein LOC325751

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089331.1 → NP_001082800.1  coiled-coil-helix-coiled-coil-helix domain containing 3b

    See identical proteins and their annotated locations for NP_001082800.1

    Status: PROVISIONAL

    Source sequence(s)
    BC139609
    UniProtKB/TrEMBL
    A4QP12
    Related
    ENSDARP00000095647.3, ENSDART00000104877.5
    Conserved Domains (1) summary
    pfam05300
    Location:228 → 396
    DUF737; Protein of unknown function (DUF737)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    3357939..3369329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005170655.4 → XP_005170712.1  uncharacterized protein LOC325751 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BI05
    Conserved Domains (1) summary
    pfam05300
    Location:221 → 391
    DUF737; Protein of unknown function (DUF737)

  2. XM_017354055.2 → XP_017209544.1  uncharacterized protein LOC325751 isoform X2

    UniProtKB/TrEMBL
    A0A8M6YVW6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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