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wu:fe17e08 wu:fe17e08 [ Danio rerio (zebrafish) ]

Gene ID: 326789, updated on 12-Sep-2024

Summary

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Official Symbol
wu:fe17e08provided by ZNC
Official Full Name
wu:fe17e08provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4988
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-4988
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fe17e08
Annotation information
Annotation category: partial on reference assembly
Orthologs
all
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Genomic context

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See wu:fe17e08 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (53368587..53373066)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (53278137..53281596)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene un-named sa911 Neighboring gene guanylate-binding protein 4 Neighboring gene guanylate-binding protein 1-like Neighboring gene protein unc-79 homolog Neighboring gene protein unc-79 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
oocyte zinc finger protein XlCOF6; uncharacterized protein LOC326789

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    53368587..53373066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467514.2 → XP_021323189.1  oocyte zinc finger protein XlCOF6

    UniProtKB/TrEMBL
    A0A8M9PF33
    Conserved Domains (2) summary
    COG5048
    Location:122 → 421
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:349 → 369
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
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