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hapstr1a HUWE1 associated protein modifying stress responses a [ Danio rerio (zebrafish) ]

Gene ID: 327299, updated on 2-Nov-2024

Summary

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Official Symbol
hapstr1aprovided by ZNC
Official Full Name
HUWE1 associated protein modifying stress responses aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5510
See related
Ensembl:ENSDARG00000055383 AllianceGenome:ZFIN:ZDB-GENE-030131-5510
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fd20g11; zgc:66160; wu:fd20g11
Summary
Predicted to be located in nucleus. Is expressed in female organism. Orthologous to human HAPSTR1 (HUWE1 associated protein modifying stress responses). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See hapstr1a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (27595037..27601812, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (27464195..27470970, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a Neighboring gene uncharacterized LOC137490601 Neighboring gene si:ch211-157c3.4 Neighboring gene ubiquitin specific peptidase 7 (herpes virus-associated) Neighboring gene pentraxin 4, long

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals. Knoll-Gellida A, et al. BMC Genomics, 2006 Mar 9. PMID 16526958, Free PMC Article
  2. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HUWE1-associated protein modifying stress responses 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328166.1 → NP_001315095.1  HUWE1-associated protein modifying stress responses 1

    Status: PROVISIONAL

    Source sequence(s)
    CR396594
    UniProtKB/TrEMBL
    A0A8M1P8W0, F1Q4T4
    Related
    ENSDARP00000072200.5, ENSDART00000077734.6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    27595037..27601812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_199781.1: Suppressed sequence

    Description
    NM_199781.1: This RefSeq was removed because it contains the wrong CDS.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials