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ccdc82 coiled-coil domain containing 82 [ Danio rerio (zebrafish) ]

Gene ID: 327538, updated on 2-Nov-2024

Summary

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Official Symbol
ccdc82provided by ZNC
Official Full Name
coiled-coil domain containing 82provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5749
See related
Ensembl:ENSDARG00000014966 AllianceGenome:ZFIN:ZDB-GENE-030131-5749
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi16c06; zgc:66477; wu:fi16c06
Summary
Predicted to be active in nucleus. Orthologous to human CCDC82 (coiled-coil domain containing 82). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ccdc82 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (40685895..40709239)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (40662594..40686194)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene aristaless related homeobox b Neighboring gene sperm associated antigen 16 Neighboring gene proteasome maturation protein Neighboring gene transfer RNA cysteine (anticodon GCA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 82

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199822.1 → NP_956116.1  coiled-coil domain-containing protein 82

    See identical proteins and their annotated locations for NP_956116.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054711
    UniProtKB/TrEMBL
    Q7SYI8
    Related
    ENSDARP00000026367.7, ENSDART00000017709.9
    Conserved Domains (1) summary
    pfam13926
    Location:255 → 411
    DUF4211; Domain of unknown function (DUF4211)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    40685895..40709239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009295663.4 → XP_009293938.1  coiled-coil domain-containing protein 82 isoform X1

    UniProtKB/TrEMBL
    A0A8M3AMI1
    Conserved Domains (1) summary
    pfam13926
    Location:254 → 410
    DUF4211; Domain of unknown function (DUF4211)
Nucleotide Protein Strain
Heading Accession and Version

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