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polr3e polymerase (RNA) III (DNA directed) polypeptide E [ Danio rerio (zebrafish) ]

Gene ID: 336518, updated on 28-Oct-2024

Summary

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Official Symbol
polr3eprovided by ZNC
Official Full Name
polymerase (RNA) III (DNA directed) polypeptide Eprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8462
See related
Ensembl:ENSDARG00000037358 AllianceGenome:ZFIN:ZDB-GENE-030131-8462
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
Sin; zgc:55592; wu:fb12d10; wu:fs42e03
Summary
Predicted to be involved in tRNA transcription by RNA polymerase III. Predicted to act upstream of or within DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
human mouse all
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Genomic context

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See polr3e in Genome Data Viewer
Location:
chromosome: 12
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (1014418..1038507, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (978831..998873, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene methyltransferase 9, His-X-His N1-histidine Neighboring gene cerebellar degeneration-related protein 2b Neighboring gene WD repeat domain phosphoinositide-interacting protein 1 Neighboring gene arf-GAP with dual PH domain-containing protein 1 Neighboring gene SRY-box transcription factor 8a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of DNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
  
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC5
Names
RNA polymerase III 80 kDa subunit RPC5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212754.1 → NP_997919.1  DNA-directed RNA polymerase III subunit RPC5

    See identical proteins and their annotated locations for NP_997919.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048877
    UniProtKB/TrEMBL
    Q7ZUL6
    Related
    ENSDARP00000126616.1, ENSDART00000152346.3
    Conserved Domains (1) summary
    pfam04801
    Location:6 → 433
    Sin_N; Sin-like protein conserved region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    1014418..1038507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068224531.1 → XP_068080632.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    Related
    ENSDARP00000096063.3, ENSDART00000105292.5

  2. XM_005169428.5 → XP_005169485.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BHA9, F1R866
    Conserved Domains (1) summary
    pfam04801
    Location:6 → 433
    Sin_N; Sin-like protein conserved region

  3. XM_068224530.1 → XP_068080631.1  DNA-directed RNA polymerase III subunit RPC5 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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