tbcb tubulin folding cofactor B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tbcbprovided by ZNC
Official Full Name: tubulin folding cofactor Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9296
See related: Ensembl:ENSDARG00000068404 AllianceGenome:ZFIN:ZDB-GENE-030131-9296
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ckap1; zgc:55620; wu:fa56d03; ik:tdsubc_2e4; xx:tdsubc_2e4
Summary: Orthologous to human TBCB (tubulin folding cofactor B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (37259800..37270740)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (37278792..37289732)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fa56d03 (e-PCR)
- UniSTS:188820

AI522461 (e-PCR)
- UniSTS:206321

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables alpha-tubulin binding	IEA Inferred from Electronic Annotation more info
enables microtubule plus-end binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in cytoplasmic microtubule organization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within post-chaperonin tubulin folding pathway	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tubulin complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cell cortex	IBA Inferred from Biological aspect of Ancestor more info
located_in microtubule	IEA Inferred from Electronic Annotation more info
is_active_in microtubule plus-end	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: tubulin-folding cofactor B

Names: cytoskeleton-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_212775.1 → NP_997940.1 tubulin-folding cofactor B

See identical proteins and their annotated locations for NP_997940.1

Status: PROVISIONAL

Source sequence(s)

BC044438

UniProtKB/TrEMBL

Q803K6

Related

ENSDARP00000072516.3, ENSDART00000078053.4

Conserved Domains (2) summary

cd01789
Location:12 → 95

Alp11_N; Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

pfam01302
Location:164 → 228

CAP_GLY; CAP-Gly domain