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rnf41l ring finger protein 41, like [ Danio rerio (zebrafish) ]

Gene ID: 337495, updated on 2-Nov-2024

Summary

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Official Symbol
rnf41lprovided by ZNC
Official Full Name
ring finger protein 41, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9441
See related
Ensembl:ENSDARG00000073918 AllianceGenome:ZFIN:ZDB-GENE-030131-9441
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj78g01; wu:fj78g01
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See rnf41l in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26719880..26731966, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (26846438..26858546, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene epithelial splicing regulatory protein 1 Neighboring gene vir like m6A methyltransferase associated Neighboring gene RAD54 homolog B Neighboring gene fibrinogen silencer binding protein Neighboring gene GTP binding protein overexpressed in skeletal muscle

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Toro S, et al. Gene Expr Patterns, 2009 Apr. PMID 19166982, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 151; ring finger protein 41, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    26719880..26731966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292366.4 → XP_009290641.1  RING finger protein 151 isoform X2

    See identical proteins and their annotated locations for XP_009290641.1

    UniProtKB/TrEMBL
    A0A8M1RHR1, E7FCQ3, E9QJ18
    Related
    ENSDARP00000120710.1, ENSDART00000135860.3
    Conserved Domains (3) summary
    pfam07798
    Location:150 → 234
    DUF1640; Protein of unknown function (DUF1640)
    pfam13639
    Location:18 → 53
    zf-RING_2; Ring finger domain
    cl19105
    Location:82 → 130
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...

  2. XM_068214144.1 → XP_068070245.1  RING finger protein 151 isoform X1

    Related
    ENSDARP00000143757.1, ENSDART00000177668.2

  3. XM_009292363.4 → XP_009290638.1  RING finger protein 151 isoform X2

    See identical proteins and their annotated locations for XP_009290638.1

    UniProtKB/TrEMBL
    A0A8M1RHR1, E7FCQ3, E9QJ18
    Conserved Domains (3) summary
    pfam07798
    Location:150 → 234
    DUF1640; Protein of unknown function (DUF1640)
    pfam13639
    Location:18 → 53
    zf-RING_2; Ring finger domain
    cl19105
    Location:82 → 130
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...

  4. XM_068214143.1 → XP_068070244.1  RING finger protein 151 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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