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nfatc2ip nuclear factor of activated T cells 2 interacting protein [ Danio rerio (zebrafish) ]

Gene ID: 337574, updated on 28-Oct-2024

Summary

Official Symbol
nfatc2ipprovided by ZNC
Official Full Name
nuclear factor of activated T cells 2 interacting proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9520
See related
Ensembl:ENSDARG00000011360 AllianceGenome:ZFIN:ZDB-GENE-030131-9520
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fj84d09
Summary
Predicted to be involved in positive regulation of transcription by RNA polymerase II. Orthologous to human NFATC2IP (nuclear factor of activated T cells 2 interacting protein). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See nfatc2ip in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (15476536..15487111, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (15326736..15337311, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene linker for activation of T cells Neighboring gene si:dkey-56d12.4 Neighboring gene SPNS lysolipid transporter 1, lysophospholipid Neighboring gene SAGA complex associated factor 29 Neighboring gene uncharacterized LOC137490044

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
NFATC2-interacting protein
Names
nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327756.1NP_001314685.1  NFATC2-interacting protein

    Status: VALIDATED

    Source sequence(s)
    BX784026, EH552196
    UniProtKB/TrEMBL
    A0A8M1P3N7, F1Q553
    Related
    ENSDARP00000006646.5, ENSDART00000011320.6

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    15476536..15487111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394524.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    131516..143241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)