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fkbp3 FKBP prolyl isomerase 3 [ Danio rerio (zebrafish) ]

Gene ID: 368863, updated on 2-Nov-2024

Summary

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Official Symbol
fkbp3provided by ZNC
Official Full Name
FKBP prolyl isomerase 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-419
See related
AllianceGenome:ZFIN:ZDB-GENE-030616-419
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
FK506; fb75c04; wu:fb75c04; zgc:110728; si:dz261o22.2
Summary
Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Is expressed in alar plate midbrain region; immature eye; nervous system; pectoral fin musculature; and pharyngeal arch 3-7 skeleton. Orthologous to human FKBP3 (FKBP prolyl isomerase 3). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See fkbp3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (54249236..54259787, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (54464066..54474617)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion a Neighboring gene PRP39 pre-mRNA processing factor 39 homolog (yeast) Neighboring gene actin related protein 10 Neighboring gene zona pellucida glycoprotein 2, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Minor class splicing shapes the zebrafish transcriptome during development. Markmiller S, et al. Proc Natl Acad Sci U S A, 2014 Feb 25. PMID 24516132, Free PMC Article
  2. De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. Hinaux H, et al. PLoS One, 2013. PMID 23326453, Free PMC Article
  3. Melanoma genome evolution across species. Kansler ER, et al. BMC Genomics, 2017 Feb 7. PMID 28173755, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC110728

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase FKBP3
Names
FK506 binding protein 3
NP_001071238.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077770.1 → NP_001071238.1  peptidyl-prolyl cis-trans isomerase FKBP3

    See identical proteins and their annotated locations for NP_001071238.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095388
    UniProtKB/TrEMBL
    Q503C0
    Conserved Domains (1) summary
    pfam00254
    Location:120 → 217
    FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    54249236..54259787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001004519.1: Suppressed sequence

    Description
    NM_001004519.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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