U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

acin1a apoptotic chromatin condensation inducer 1a [ Danio rerio (zebrafish) ]

Gene ID: 368893, updated on 17-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
acin1aprovided by ZNC
Official Full Name
apoptotic chromatin condensation inducer 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-583
See related
AllianceGenome:ZFIN:ZDB-GENE-030616-583
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
acinus; acinusa; acinusl; wu:fb04g06; wu:fb40f03; wu:fb68h03; wu:fb80f07; wu:fc12e10; ik:tdsubc_2g5; si:zc14a17.12; xx:tdsubc_2g5
Summary
Predicted to enable nucleic acid binding activity. Orthologous to human ACIN1 (apoptotic chromatin condensation inducer 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See acin1a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (38197820..38225382, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (38215487..38243141, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene spalt-like transcription factor 2 Neighboring gene matrix metallopeptidase 14b (membrane-inserted) Neighboring gene si:ch211-14a17.11 Neighboring gene si:ch211-14a17.10

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag. Matern MS, et al. Front Cell Dev Biol, 2018. PMID 29765956, Free PMC Article
  2. Processing of fish Ig heavy chain transcripts: diverse splicing patterns and unusual nonsense mediated decay. Quiniou SM, et al. Dev Comp Immunol, 2011 Sep. PMID 21168434
  3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of ASAP complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
apoptotic chromatin condensation inducer 1a; apoptotic chromatin condensation inducer in the nucleus
Names
apoptotic chromatin condensation inducer in the nucleus, a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    38197820..38225382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171276.2 → XP_005171333.2  apoptotic chromatin condensation inducer in the nucleus isoform X2

  2. XM_005171275.2 → XP_005171332.2  apoptotic chromatin condensation inducer in the nucleus isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394506.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    241804..269991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471261.2 → XP_021326936.1  apoptotic chromatin condensation inducer in the nucleus isoform X4

    UniProtKB/TrEMBL
    A0A8M9PXD0
    Conserved Domains (6) summary
    cd12432
    Location:1629 → 1717
    RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
    pfam02037
    Location:32 → 66
    SAP; SAP domain
    pfam16294
    Location:1770 → 1845
    RSB_motif; RNSP1-SAP18 binding (RSB) motif
    cl26011
    Location:449 → 523
    Pkinase; Protein kinase domain
    cl26511
    Location:662 → 1416
    Neuromodulin_N; Gap junction protein N-terminal region
    cl27333
    Location:34 → 173
    PARP_reg; Poly(ADP-ribose) polymerase, regulatory domain

  2. XM_021471260.2 → XP_021326935.1  apoptotic chromatin condensation inducer in the nucleus isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q0P4
    Conserved Domains (6) summary
    cd12432
    Location:1630 → 1718
    RRM_ACINU; RNA recognition motif in apoptotic chromatin condensation inducer in the nucleus (acinus) and similar proteins
    pfam02037
    Location:32 → 66
    SAP; SAP domain
    pfam16294
    Location:1771 → 1846
    RSB_motif; RNSP1-SAP18 binding (RSB) motif
    cl26011
    Location:449 → 523
    Pkinase; Protein kinase domain
    cl26511
    Location:662 → 1417
    Neuromodulin_N; Gap junction protein N-terminal region
    cl27333
    Location:34 → 173
    PARP_reg; Poly(ADP-ribose) polymerase, regulatory domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001007105.2: Suppressed sequence

    Description
    NM_001007105.2: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ACIN1 (GeneID:22985).
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools