sinhcafl SIN3-HDAC complex associated factor, like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sinhcaflprovided by ZNC
Official Full Name: SIN3-HDAC complex associated factor, likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-031114-2
See related: Ensembl:ENSDARG00000078118 AllianceGenome:ZFIN:ZDB-GENE-031114-2
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: TERA; fam60a; fam60al; C12orf14; zgc:66459; sinhcaflas; wu:fb72g07; wu:fc93f01
Summary: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in head. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: suggests misassembly
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (64961931..64971355, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (64737269..64745274, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb72g07.x1 (e-PCR)
- UniSTS:187420

fb72g07.x1 (e-PCR)
- UniSTS:191120

fi19h12.x1 (e-PCR)
- UniSTS:204497

fc93f01.x1 (e-PCR)
- UniSTS:204009

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SIN3-HDAC complex associated factor, like

Names: fam60al -AS; family with sequence similarity 60, member A, like; sinhcafl antisense lncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.