slc13a1 solute carrier family 13 member 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc13a1provided by ZNC
Official Full Name: solute carrier family 13 member 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-031222-3
See related: Ensembl:ENSDARG00000045638 AllianceGenome:ZFIN:ZDB-GENE-031222-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb1073
Summary: Enables sodium:sulfate symporter activity. Acts upstream of or within sodium ion transport and sulfate transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and pleuroperitoneal region. Orthologous to human SLC13A1 (solute carrier family 13 member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 25

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (27923989..27932814)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (27469267..27489523)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables sodium:sulfate symporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables sodium:sulfate symporter activity	IDA Inferred from Direct Assay more info	PubMed
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within monoatomic ion transport	IEA Inferred from Electronic Annotation more info
involved_in sodium ion transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within sodium ion transport	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within sodium ion transport	IEA Inferred from Electronic Annotation more info
involved_in sulfate transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within sulfate transmembrane transport	IDA Inferred from Direct Assay more info	PubMed
involved_in transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: solute carrier family 13 member 1

Names: solute carrier family 13 (sodium/sulphate symporters), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199281.1 → NP_954975.1 solute carrier family 13 member 1

Status: PROVISIONAL

Source sequence(s)

BC058313

UniProtKB/TrEMBL

A0A8M1PCW9, Q6PE27

Related

ENSDARP00000047006.5, ENSDART00000047007.6

Conserved Domains (2) summary

COG0471
Location:14 → 561

CitT; Di- and tricarboxylate transporter [Carbohydrate transport and metabolism]

cl21473
Location:7 → 565

ArsB_NhaD_permease; Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices ...