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snapc1b small nuclear RNA activating complex, polypeptide 1b [ Danio rerio (zebrafish) ]

Gene ID: 393224, updated on 2-Nov-2024

Summary

Official Symbol
snapc1bprovided by ZNC
Official Full Name
small nuclear RNA activating complex, polypeptide 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-716
See related
Ensembl:ENSDARG00000003827 AllianceGenome:ZFIN:ZDB-GENE-040426-716
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:55475
Summary
Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See snapc1b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (37586491..37600588, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (37460601..37474698, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene si:ch211-188i4.4 Neighboring gene synaptotagmin XVI Neighboring gene interferon alpha inducible protein 27.1 Neighboring gene interferon alpha inducible protein 27.3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC55475

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in snRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of snRNA-activating protein complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
snRNA-activating protein complex subunit 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200254.1NP_956548.1  snRNA-activating protein complex subunit 1b

    See identical proteins and their annotated locations for NP_956548.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048040
    UniProtKB/TrEMBL
    B2GPL7, F6NS15, Q7ZUP7
    Related
    ENSDARP00000023186.6, ENSDART00000003888.7
    Conserved Domains (1) summary
    pfam09808
    Location:8193
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    37586491..37600588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)