slc22a7b.1 solute carrier family 22 member 7b, tandem duplicate 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc22a7b.1provided by ZNC
Official Full Name: solute carrier family 22 member 7b, tandem duplicate 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1311
See related: Ensembl:ENSDARG00000056643 Ensembl:ENSDARG00000056652 AllianceGenome:ZFIN:ZDB-GENE-040426-1311
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: oat2e; slc22a7b; zgc:63958
Summary: Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Located in plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLC22A7 (solute carrier family 22 member 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (22002857..22025348, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (21983023..22005464, complement)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: solute carrier family 22 member 7b.1

Names: solute carrier family 22 (organic anion transporter), member 7b, tandem duplicate 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200349.1 → NP_956643.1 solute carrier family 22 member 7b.1

See identical proteins and their annotated locations for NP_956643.1

Status: PROVISIONAL

Source sequence(s)

BC053165

UniProtKB/TrEMBL

Q7T3D2

Related

ENSDARP00000033859.7, ENSDART00000031998.8

Conserved Domains (2) summary

cd06174
Location:143 → 507

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

TIGR00898
Location:11 → 517

2A0119; cation transport protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007128.7 Reference GRCz11 Primary Assembly

Range

22002857..22025348 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005158690.5 → XP_005158747.1 solute carrier family 22 member 7b.1 isoform X2

UniProtKB/TrEMBL

A0A8M2B5N1, F1Q880

Conserved Domains (2) summary

cd06174
Location:143 → 507

MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

TIGR00898
Location:11 → 517

2A0119; cation transport protein
XM_021467126.2 → XP_021322801.1 solute carrier family 22 member 7b.1 isoform X1

UniProtKB/TrEMBL

A0A8M9PKL4

Related

ENSDARP00000073303.6, ENSDART00000078843.6

Conserved Domains (1) summary

cl26863
Location:12 → 516

Sugar_tr; Sugar (and other) transporter