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rasd1 RAS, dexamethasone-induced 1 [ Danio rerio (zebrafish) ]

Gene ID: 393504, updated on 2-Nov-2024

Summary

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Official Symbol
rasd1provided by ZNC
Official Full Name
RAS, dexamethasone-induced 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1473
See related
Ensembl:ENSDARG00000019274 AllianceGenome:ZFIN:ZDB-GENE-040426-1473
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:65909
Summary
Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in signal transduction. Predicted to be located in plasma membrane. Orthologous to several human genes including RASD1 (ras related dexamethasone induced 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rasd1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (1398404..1400006)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (1370086..1371688)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene phosphatidylethanolamine N-methyltransferase Neighboring gene uncharacterized LOC100535225 Neighboring gene uncharacterized LOC137496782 Neighboring gene uncharacterized LOC795264 Neighboring gene mediator complex subunit 9 Neighboring gene COP9 signalosome subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin. Higdon CW, et al. PLoS One, 2013. PMID 23874447, Free PMC Article
  2. Identification and Tissue-Specific Characterization of Novel SHOX-Regulated Genes in Zebrafish Highlights SOX Family Members Among Other Genes. Hoffmann S, et al. Front Genet, 2021. PMID 34122528, Free PMC Article
  3. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. Takeuchi M, et al. J Comp Neurol, 2017 May 1. PMID 27615194
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC65909

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G-protein beta-subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
dexamethasone-induced Ras-related protein 1
NP_956826.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200532.1 → NP_956826.1  dexamethasone-induced Ras-related protein 1

    See identical proteins and their annotated locations for NP_956826.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056272
    UniProtKB/TrEMBL
    A0A8M1PEK5, Q6PHV8
    Related
    ENSDARP00000015776.7, ENSDART00000026303.9
    Conserved Domains (2) summary
    cd04143
    Location:20 → 265
    Rhes_like; Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)
    smart00010
    Location:18 → 190
    small_GTPase; Small GTPase of the Ras superfamily; ill-defined subfamily

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    1398404..1400006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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