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efr3a EFR3 homolog A (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 393800, updated on 2-Nov-2024

Summary

Official Symbol
efr3aprovided by ZNC
Official Full Name
EFR3 homolog A (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1681
See related
Ensembl:ENSDARG00000005163 AllianceGenome:ZFIN:ZDB-GENE-040426-1681
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73123
Summary
Predicted to be involved in protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human EFR3A (EFR3 homolog A). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See efr3a in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (42872660..42926342)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (41909111..43090853)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488066 Neighboring gene adenylate cyclase 8 (brain) Neighboring gene uncharacterized LOC103910105 Neighboring gene otoconin 90 Neighboring gene HHLA1 neighbor of OC90

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200827.1NP_957121.1  protein EFR3 homolog A

    See identical proteins and their annotated locations for NP_957121.1

    Status: PROVISIONAL

    Source sequence(s)
    BC060906
    UniProtKB/TrEMBL
    A0A0R4II27, Q6P970
    Related
    ENSDARP00000035342.8, ENSDART00000036979.8

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    42872660..42926342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394511.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    27091..80773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)