U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zgc:77614 zgc:77614 [ Danio rerio (zebrafish) ]

Gene ID: 393868, updated on 19-Jun-2024

Summary

Go to the top of the page Help
Official Symbol
zgc:77614provided by ZNC
Official Full Name
zgc:77614provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1844
See related
Ensembl:ENSDARG00000114407 AllianceGenome:ZFIN:ZDB-GENE-040426-1844
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; forerunner cell group; neural plate; neural rod; and pronephric duct. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zgc:77614 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (34443487..34445586)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (34525543..34527524)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene E3 ubiquitin-protein ligase RBBP6-like Neighboring gene si:busm1-37i06.3 Neighboring gene uncharacterized LOC110440032

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC77614

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC393868

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200894.3 → NP_957188.1  uncharacterized protein LOC393868

    See identical proteins and their annotated locations for NP_957188.1

    Status: VALIDATED

    Source sequence(s)
    BX005399
    UniProtKB/TrEMBL
    A0A2R8QBJ7, A0A2R8RIC4, Q6P2V0
    Related
    ENSDARP00000147542.1, ENSDART00000187788.1
    Conserved Domains (1) summary
    pfam08783
    Location:4 → 72
    DWNN; DWNN domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    34443487..34445586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304092.3 → XP_009302367.1  uncharacterized protein LOC393868 isoform X1

    See identical proteins and their annotated locations for XP_009302367.1

    UniProtKB/TrEMBL
    A0A8M6Z884
    Conserved Domains (2) summary
    COG5222
    Location:2 → 168
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam08783
    Location:4 → 72
    DWNN; DWNN domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394736.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    164214..166050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472110.1 → XP_021327785.1  uncharacterized protein LOC393868 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z884
    Conserved Domains (2) summary
    COG5222
    Location:2 → 168
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam08783
    Location:4 → 72
    DWNN; DWNN domain

  2. XM_021472111.1 → XP_021327786.1  uncharacterized protein LOC393868 isoform X3

    Conserved Domains (1) summary
    pfam08783
    Location:4 → 72
    DWNN; DWNN domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.