rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rrp9provided by ZNC
Official Full Name: ribosomal RNA processing 9, U3 small nucleolar RNA binding proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060427-1
See related: Ensembl:ENSDARG00000041991 AllianceGenome:ZFIN:ZDB-GENE-060427-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: rnu3ip2
Summary: Predicted to enable snoRNA binding activity. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (36215690..36230163, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (35953707..35968222, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G46479 (e-PCR)
- UniSTS:107281

fi05a05.x1 (e-PCR)
- UniSTS:196665

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables U3 snoRNA binding	IEA Inferred from Electronic Annotation more info
enables snoRNA binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: U3 small nucleolar RNA-interacting protein 2

Names: RNA, U3 small nucleolar interacting protein 2; ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001118895.1 → NP_001112367.1 U3 small nucleolar RNA-interacting protein 2

Status: PROVISIONAL

Source sequence(s)

BX248230

UniProtKB/TrEMBL

A0A2R8RL46, A0A8M1NI67

Related

ENSDARP00000147720.1, ENSDART00000189782.1

Conserved Domains (3) summary

COG2319
Location:114 → 445

WD40; WD40 repeat [General function prediction only]

cd00200
Location:134 → 435

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:145 → 190

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007122.7 Reference GRCz11 Primary Assembly

Range

36215690..36230163 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005172901.4 → XP_005172958.1 U3 small nucleolar RNA-interacting protein 2 isoform X1

UniProtKB/TrEMBL

A0A8M2BKP0, F1R3Q7

Related

ENSDARP00000121702.1, ENSDART00000135888.2

Conserved Domains (3) summary

COG2319
Location:114 → 442

WD40; WD40 repeat [General function prediction only]

cd00200
Location:134 → 432

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:145 → 190

7WD40; WD40 repeat [structural motif]