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si:ch211-272n13.3 si:ch211-272n13.3 [ Danio rerio (zebrafish) ]

Gene ID: 402845, updated on 17-Sep-2024

Summary

Official Symbol
si:ch211-272n13.3provided by ZNC
Official Full Name
si:ch211-272n13.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-216
See related
AllianceGenome:ZFIN:ZDB-GENE-081104-216
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ankrd26
Summary
Orthologous to several human genes including ANKRD18A (ankyrin repeat domain 18A); ANKRD18B (ankyrin repeat domain 18B); and ANKRD20A1 (ankyrin repeat domain 20 family member A1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See si:ch211-272n13.3 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
47
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (3573079..3647269, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (3447364..3521548, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene zgc:194202 Neighboring gene leukotriene B4 receptor 1-like Neighboring gene inner centromere protein Neighboring gene prion protein, related sequence 3

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
ankyrin repeat domain-containing protein 26
Names
ankyrin repeat domain 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    3573079..3647269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217474.1XP_068073575.1  ankyrin repeat domain-containing protein 26 isoform X4

  2. XM_021470587.2XP_021326262.1  ankyrin repeat domain-containing protein 26 isoform X3

    UniProtKB/TrEMBL
    A0A8M9P6L5
    Conserved Domains (6) summary
    cd00204
    Location:59184
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:130161
    ANK; ANK repeat [structural motif]
    pfam14915
    Location:13601663
    CCDC144C; CCDC144C protein coiled-coil region
    cl25732
    Location:13412153
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26305
    Location:544842
    XPG_I; XPG I-region
    cl26761
    Location:7051207
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
  3. XM_068217473.1XP_068073574.1  ankyrin repeat domain-containing protein 26 isoform X2

  4. XM_068217472.1XP_068073573.1  ankyrin repeat domain-containing protein 26 isoform X1