cltrn collectrin, amino acid transport regulator [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cltrnprovided by ZNC
Official Full Name: collectrin, amino acid transport regulatorprovided by ZNC
Primary source: ZFIN:ZDB-GENE-100922-43
See related: Ensembl:ENSDARG00000041644 AllianceGenome:ZFIN:ZDB-GENE-100922-43
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: tmem27; si:dkey-194e6.1
Summary: Predicted to be involved in positive regulation of amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human CLTRN (collectrin, amino acid transport regulator). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (40872688..40895168, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (40979784..41002264, complement)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in positive regulation of amino acid transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: collectrin

Names: transmembrane protein 27

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001139458.1 → NP_001132930.1 collectrin precursor

Status: VALIDATED

Source sequence(s)

BC155583, EB927370

UniProtKB/TrEMBL

A0A8M1NLV3, F1QQZ6, Q1JPS7

Related

ENSDARP00000061036.5, ENSDART00000061037.6

Conserved Domains (1) summary

pfam16959
Location:38 → 186

Collectrin; Renal amino acid transporter