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tcp11l2 t-complex 11, testis-specific-like 2 [ Danio rerio (zebrafish) ]

Gene ID: 406293, updated on 2-Nov-2024

Summary

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Official Symbol
tcp11l2provided by ZNC
Official Full Name
t-complex 11, testis-specific-like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1956
See related
Ensembl:ENSDARG00000027316 AllianceGenome:ZFIN:ZDB-GENE-040426-1956
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73347; wu:fc48b04
Summary
Predicted to be involved in signal transduction. Orthologous to human TCP11L2 (t-complex 11 like 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See tcp11l2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (16725947..16742893)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (16736957..16753917)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene DENN/MADD domain containing 5B Neighboring gene plakophilin 2 Neighboring gene uncharacterized LOC110439359 Neighboring gene uncharacterized LOC101882149

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
T-complex protein 11-like protein 2
Names
t-complex 11-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213020.1 → NP_998185.1  T-complex protein 11-like protein 2

    See identical proteins and their annotated locations for NP_998185.1

    Status: PROVISIONAL

    Source sequence(s)
    BC063323
    UniProtKB/TrEMBL
    Q6P4P3
    Related
    ENSDARP00000028958.6, ENSDART00000034441.7
    Conserved Domains (1) summary
    pfam05794
    Location:82 → 501
    Tcp11; T-complex protein 11

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    16725947..16742893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164731.5 → XP_005164788.1  T-complex protein 11-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BC11, Q5RGW3
    Conserved Domains (1) summary
    pfam05794
    Location:82 → 501
    Tcp11; T-complex protein 11
Nucleotide Protein Strain
Heading Accession and Version

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