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caprin1b cell cycle associated protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 406341, updated on 27-Mar-2024

Summary

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Official Symbol
caprin1bprovided by ZNC
Official Full Name
cell cycle associated protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2020
See related
Ensembl:ENSDARG00000054272 AllianceGenome:ZFIN:ZDB-GENE-040426-2020
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rng105; caprin1; fe25d09; gpiap1l; zgc:55902; wu:fa96f04; wu:fe25d09; wu:fj66h11; ik:tdsubc_2d9; xx:tdsubc_2d9
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within cell differentiation and negative regulation of translation. Predicted to be active in cytoplasm. Orthologous to human CAPRIN1 (cell cycle associated protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See caprin1b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (38247797..38270616, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (38266789..38290281, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene si:dkey-10o6.2 Neighboring gene nucleobindin 2b Neighboring gene N-acetyltransferase 10 Neighboring gene LIM domain only 2 (rhombotin-like 1) Neighboring gene ALX homeobox 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RNA granule protein 140 (RNG140), a paralog of RNG105 localized to distinct RNA granules in neuronal dendrites in the adult vertebrate brain. Shiina N, et al. J Biol Chem, 2010 Jul 30. PMID 20516077, Free PMC Article
  2. Understanding the complexity of epimorphic regeneration in zebrafish caudal fin tissue: A transcriptomic and proteomic approach. Banu S, et al. Genomics, 2022 Mar. PMID 35134499
  3. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
caprin-1; caprin-1b
Names
RNA granule protein 105
cell cycle associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213068.1 → NP_998233.1  caprin-1b

    See identical proteins and their annotated locations for NP_998233.1

    Status: PROVISIONAL

    Source sequence(s)
    BC047196
    UniProtKB/TrEMBL
    Q802U4
    Related
    ENSDARP00000089659.3, ENSDART00000098889.5
    Conserved Domains (2) summary
    TIGR04260
    Location:560 → 638
    Cyano_gly_rpt; rSAM-associated Gly-rich repeat protein
    pfam12287
    Location:366 → 679
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    38247797..38270616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467626.1 → XP_021323301.1  caprin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PM15
    Conserved Domains (2) summary
    pfam12287
    Location:357 → 680
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    cl25732
    Location:24 → 158
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021467627.1 → XP_021323302.1  caprin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9P113
    Conserved Domains (2) summary
    pfam12287
    Location:358 → 680
    Caprin-1_C; Cytoplasmic activation/proliferation-associated protein-1 C term
    cl25732
    Location:24 → 158
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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