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lsm12b LSM12 homolog b [ Danio rerio (zebrafish) ]

Gene ID: 406422, updated on 12-Sep-2024

Summary

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Official Symbol
lsm12bprovided by ZNC
Official Full Name
LSM12 homolog bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2164
See related
Ensembl:ENSDARG00000109510 AllianceGenome:ZFIN:ZDB-GENE-040426-2164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
lsm12; lsm12a; zgc:66039; wu:fe01f11
Summary
Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See lsm12b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (3287781..3299149, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (3176141..3187509, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 70 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b Neighboring gene transmembrane protein 101 Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Differentially sensitive neuronal subpopulations in the central nervous system and the formation of hindbrain heterotopias in ethanol-exposed zebrafish. Buckley DM, et al. Birth Defects Res, 2019 Jul 15. PMID 30793540, Free PMC Article
  2. Localized TPC1-mediated Ca2+ release from endolysosomes contributes to myoseptal junction development in zebrafish. Rice KL, et al. J Cell Sci, 2022 May 1. PMID 35393618
  3. Adrenergic activation modulates the signal from the Reissner fiber to cerebrospinal fluid-contacting neurons during development. Cantaut-Belarif Y, et al. Elife, 2020 Oct 13. PMID 33048048, Free PMC Article
  4. Identification, expression and regulation of amphioxus G6Pase gene with an emphasis on origin of liver. Wang Y, et al. Gen Comp Endocrinol, 2015 Apr 1. PMID 25745818
  5. Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish. Sokol AM, et al. PLoS Genet, 2018 Nov. PMID 30457989, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein LSM12 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213148.1 → NP_998313.1  protein LSM12 homolog A

    See identical proteins and their annotated locations for NP_998313.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059805
    UniProtKB/Swiss-Prot
    Q6PBA2
    Related
    ENSDARP00000152353.1, ENSDART00000182032.1
    Conserved Domains (2) summary
    cd01735
    Location:8 → 68
    LSm12_N; Like-Sm protein 12, N-terminal domain
    smart00995
    Location:79 → 166
    AD; Anticodon-binding domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    3287781..3299149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PBA2.1 GenPept UniProtKB/Swiss-Prot:Q6PBA2

Gene LinkOut

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