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sh3bp5la SH3-binding domain protein 5-like, a [ Danio rerio (zebrafish) ]

Gene ID: 406439, updated on 28-Oct-2024

Summary

Official Symbol
sh3bp5laprovided by ZNC
Official Full Name
SH3-binding domain protein 5-like, aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2187
See related
Ensembl:ENSDARG00000019160 AllianceGenome:ZFIN:ZDB-GENE-040426-2187
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63903; wu:fb57h06; wu:fe18g01
Summary
Predicted to enable protein kinase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to be active in cytoplasm. Is expressed in adaxial cell and myotome. Orthologous to human SH3BP5L (SH3 binding domain protein 5 like). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See sh3bp5la in Genome Data Viewer
Location:
chromosome: 15
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (34854025..34865810, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (34996056..35008191, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor b (TNF superfamily, member 2) Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 1a Neighboring gene alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a Neighboring gene ring finger protein 183

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 
enables protein kinase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SH3-binding domain protein 5-like, a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213160.1NP_998325.1  SH3-binding domain protein 5-like, a

    See identical proteins and their annotated locations for NP_998325.1

    Status: PROVISIONAL

    Source sequence(s)
    BC057413
    UniProtKB/TrEMBL
    Q6PFU6
    Related
    ENSDARP00000090496.2, ENSDART00000099723.4
    Conserved Domains (1) summary
    pfam05276
    Location:67293
    SH3BP5; SH3 domain-binding protein 5 (SH3BP5)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    34854025..34865810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)