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gdpd3a glycerophosphodiester phosphodiesterase domain containing 3a [ Danio rerio (zebrafish) ]

Gene ID: 406482, updated on 28-Oct-2024

Summary

Official Symbol
gdpd3aprovided by ZNC
Official Full Name
glycerophosphodiester phosphodiesterase domain containing 3aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2279
See related
Ensembl:ENSDARG00000074466 AllianceGenome:ZFIN:ZDB-GENE-040426-2279
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gdpd3; gdpd1l; zgc:77781; wu:fl20d04
Summary
Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; lens; and pronephric duct. Orthologous to human GDPD3 (glycerophosphodiester phosphodiesterase domain containing 3). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
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Genomic context

See gdpd3a in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (26193592..26204572, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (26062721..26073701, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:ch211-11k18.4 Neighboring gene yippee-like 3 Neighboring gene mitogen-activated protein kinase 3 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 9

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables lysophospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phosphoric diester hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within brain development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in glycerophospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
lysophospholipase D GDPD3a
Names
glycerophosphodiester phosphodiesterase domain containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213201.1NP_998366.1  lysophospholipase D GDPD3a

    See identical proteins and their annotated locations for NP_998366.1

    Status: PROVISIONAL

    Source sequence(s)
    BC064306
    UniProtKB/TrEMBL
    A0A8N1TXU9, Q6P2T3
    Related
    ENSDARP00000094523.4, ENSDART00000103748.6
    Conserved Domains (2) summary
    cd08612
    Location:13310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    pfam03009
    Location:44301
    GDPD; Glycerophosphoryl diester phosphodiesterase family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    26193592..26204572 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)