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vps26b VPS26, retromer complex component B [ Danio rerio (zebrafish) ]

Gene ID: 406684, updated on 2-Nov-2024

Summary

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Official Symbol
vps26bprovided by ZNC
Official Full Name
VPS26, retromer complex component Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2699
See related
Ensembl:ENSDARG00000015823 AllianceGenome:ZFIN:ZDB-GENE-040426-2699
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56297; wu:fb49d07; wu:fb50d06
Summary
Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26 retromer complex component B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See vps26b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (19324702..19331078)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (19388955..19395346)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487741 Neighboring gene junctional adhesion molecule 3a Neighboring gene thymocyte nuclear protein 1 Neighboring gene acyl-CoA dehydrogenase family, member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos. Lemeer S, et al. Mol Cell Proteomics, 2008 Nov. PMID 18550893
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of retromer complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 26B
Names
vacuolar protein sorting 26 homolog B
vesicle protein sorting 26B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213375.1 → NP_998540.1  vacuolar protein sorting-associated protein 26B

    See identical proteins and their annotated locations for NP_998540.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046056
    UniProtKB/Swiss-Prot
    Q7ZV03
    Related
    ENSDARP00000020396.5, ENSDART00000022015.6
    Conserved Domains (1) summary
    pfam03643
    Location:6 → 281
    Vps26; Vacuolar protein sorting-associated protein 26

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    19324702..19331078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157511.5 → XP_005157568.1  vacuolar protein sorting-associated protein 26B isoform X1

    UniProtKB/TrEMBL
    A0A2R8Q1X8, A0A8M2B3N4
    Conserved Domains (1) summary
    pfam03643
    Location:17 → 292
    Vps26; Vacuolar protein sorting-associated protein 26

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394945.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    227600..234026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZV03.1 GenPept UniProtKB/Swiss-Prot:Q7ZV03

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