U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cab39l1 calcium binding protein 39, like 1 [ Danio rerio (zebrafish) ]

Gene ID: 406822, updated on 17-Aug-2024

Summary

Official Symbol
cab39l1provided by ZNC
Official Full Name
calcium binding protein 39, like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2897
See related
Ensembl:ENSDARG00000021374 AllianceGenome:ZFIN:ZDB-GENE-040426-2897
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cab39; zgc:55451; wu:fb72b01; wu:fi37c08
Summary
Predicted to enable protein serine/threonine kinase activator activity. Predicted to be involved in intracellular signal transduction. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (31478999..31489372, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (31138685..31149058, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene microRNA 18c Neighboring gene coiled-coil domain containing 160 Neighboring gene PHD finger protein 6 Neighboring gene hypoxanthine phosphoribosyltransferase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein serine/threonine kinase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
calcium binding protein 39, like 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213501.1NP_998666.1  calcium binding protein 39, like 1

    See identical proteins and their annotated locations for NP_998666.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044172
    UniProtKB/TrEMBL
    Q803V8
    Related
    ENSDARP00000014384.7, ENSDART00000018347.8
    Conserved Domains (1) summary
    pfam08569
    Location:5335
    Mo25; Mo25-like

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    31478999..31489372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394915.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    35103..45476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)