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gpa33a glycoprotein A33 (transmembrane), paralog a [ Danio rerio (zebrafish) ]

Gene ID: 407680, updated on 2-Nov-2024

Summary

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Official Symbol
gpa33aprovided by ZNC
Official Full Name
glycoprotein A33 (transmembrane), paralog aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080229-4
See related
Ensembl:ENSDARG00000100223 AllianceGenome:ZFIN:ZDB-GENE-080229-4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
sc:d0144; si:zfos-1011f11.1
Summary
Predicted to act upstream of or within cell morphogenesis and immune response. Predicted to be located in plasma membrane. Is expressed in several structures, including EVL; digestive system; epidermis; periderm; and sensory system. Orthologous to human GPA33 (glycoprotein A33). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See gpa33a in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (65705..71523, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (65705..71666, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin-like domain-containing receptor 2 Neighboring gene immunoglobulin-like domain containing receptor 1a Neighboring gene coagulation factor VII, like Neighboring gene coagulation factor VII

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolutionary context can clarify gene names: Teleosts as a case study. Gasanov EV, et al. Bioessays, 2021 Jun. PMID 33829511
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cell morphogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within immune response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
glycoprotein A33 (transmembrane), paralog a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001115105.2 → NP_001108577.2  glycoprotein A33 (transmembrane), paralog a precursor

    Status: VALIDATED

    Source sequence(s)
    BC067681, FP475876
    UniProtKB/TrEMBL
    A0A0R4IIH3, A0A8M1NG43, Q6NW88
    Related
    ENSDARP00000135435.2, ENSDART00000165650.2
    Conserved Domains (3) summary
    smart00408
    Location:161 → 224
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:30 → 142
    IG_like; Immunoglobulin like
    cl11960
    Location:35 → 143
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    65705..71523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353526.3 → XP_017209015.2  glycoprotein A33 (transmembrane), paralog a isoform X1

    Related
    ENSDARP00000138102.1, ENSDART00000165267.1

  2. XM_068217059.1 → XP_068073160.1  glycoprotein A33 (transmembrane), paralog a isoform X2

  3. XM_068217070.1 → XP_068073171.1  glycoprotein A33 (transmembrane), paralog a isoform X3

  4. XM_068217051.1 → XP_068073152.1  glycoprotein A33 (transmembrane), paralog a isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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