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rabepk Rab9 effector protein with kelch motifs [ Danio rerio (zebrafish) ]

Gene ID: 431756, updated on 12-Sep-2024

Summary

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Official Symbol
rabepkprovided by ZNC
Official Full Name
Rab9 effector protein with kelch motifsprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040704-52
See related
Ensembl:ENSDARG00000112165 AllianceGenome:ZFIN:ZDB-GENE-040704-52
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91813
Summary
Orthologous to human RABEPK (Rab9 effector protein with kelch motifs). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rabepk in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (2693597..2709672)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (2452664..2468790, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 4 Neighboring gene RAB35, member RAS oncogene family a Neighboring gene guanine nucleotide binding protein (G protein), gamma 10 Neighboring gene FAST kinase domains 5 Neighboring gene heat shock protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
rab9 effector protein with kelch motifs

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002209.1 → NP_001002209.1  rab9 effector protein with kelch motifs

    See identical proteins and their annotated locations for NP_001002209.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072705
    UniProtKB/Swiss-Prot
    Q6GQN7
    UniProtKB/TrEMBL
    B2GNL1
    Related
    ENSDARP00000148548.1, ENSDART00000183882.1
    Conserved Domains (3) summary
    sd00038
    Location:149 → 199
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:203 → 243
    Kelch_1; Kelch motif
    pfam13415
    Location:159 → 211
    Kelch_3; Galactose oxidase, central domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    2693597..2709672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171726.5 → XP_005171783.1  rab9 effector protein with kelch motifs isoform X1

    See identical proteins and their annotated locations for XP_005171783.1

    UniProtKB/Swiss-Prot
    Q6GQN7
    UniProtKB/TrEMBL
    B2GNL1
    Conserved Domains (3) summary
    sd00038
    Location:149 → 199
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:203 → 243
    Kelch_1; Kelch motif
    pfam13415
    Location:159 → 211
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GQN7.1 GenPept UniProtKB/Swiss-Prot:Q6GQN7

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