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LOC4341379 uncharacterized LOC4341379 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341379, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341379
Gene description
uncharacterized LOC4341379
Locus tag
OSNPB_060581300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 24.4), leaves after flowering (RPKM 22.7) and 6 other tissues See more
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Genomic context

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See LOC4341379 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (23558189..23564005)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22699048..22705076)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341377 Neighboring gene protein NRT1/ PTR FAMILY 4.6 Neighboring gene uncharacterized LOC136356923 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC9268915

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4341379
Names
Os06g0581300
P0566A10.33-1
P0566A10.33-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    23558189..23564005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785591.3 → XP_015641077.1  uncharacterized protein LOC4341379 isoform X3

    UniProtKB/TrEMBL
    A0A0P0WYJ6, Q5VPL7
    Conserved Domains (1) summary
    pfam07343
    Location:1 → 234
    DUF1475; Protein of unknown function (DUF1475)

  2. XM_015785586.3 → XP_015641072.1  uncharacterized protein LOC4341379 isoform X1

    UniProtKB/TrEMBL
    B8B432, B9FTW8, Q0DBC1, Q5VPL8
    Conserved Domains (1) summary
    pfam07343
    Location:1 → 236
    DUF1475; Protein of unknown function (DUF1475)

  3. XM_015785590.3 → XP_015641076.1  uncharacterized protein LOC4341379 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WYJ6, Q5VPL7
    Conserved Domains (1) summary
    pfam07343
    Location:1 → 236
    DUF1475; Protein of unknown function (DUF1475)
Nucleotide Protein
Heading Accession and Version

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