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dnajc9 DnaJ (Hsp40) homolog, subfamily C, member 9 [ Danio rerio (zebrafish) ]

Gene ID: 436706, updated on 2-Nov-2024

Summary

Official Symbol
dnajc9provided by ZNC
Official Full Name
DnaJ (Hsp40) homolog, subfamily C, member 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-130
See related
Ensembl:ENSDARG00000031293 AllianceGenome:ZFIN:ZDB-GENE-040718-130
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92648
Summary
Predicted to enable heat shock protein binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in central nervous system; corneal epithelial cell; head; and immature eye. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See dnajc9 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (9499742..9510395)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (9461899..9472552)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene post-GPI attachment to proteins phospholipase 3 Neighboring gene si:ch211-207i20.2 Neighboring gene si:ch211-207i20.3 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 13

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables heat shock protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
dnaJ homolog subfamily C member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002433.1NP_001002433.1  dnaJ homolog subfamily C member 9

    See identical proteins and their annotated locations for NP_001002433.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076133
    UniProtKB/TrEMBL
    A0A8M1N0D5, Q6DH49
    Related
    ENSDARP00000044149.6, ENSDART00000044150.8
    Conserved Domains (1) summary
    pfam00226
    Location:1577
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    9499742..9510395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394831.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    233882..243917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)