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rpp38 ribonuclease P/MRP 38 subunit [ Danio rerio (zebrafish) ]

Gene ID: 436798, updated on 12-Sep-2024

Summary

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Official Symbol
rpp38provided by ZNC
Official Full Name
ribonuclease P/MRP 38 subunitprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-258
See related
Ensembl:ENSDARG00000040350 AllianceGenome:ZFIN:ZDB-GENE-040718-258
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc10d08; zgc:92924; wu:fc10d08
Summary
Predicted to enable ribonuclease P RNA binding activity. Predicted to contribute to ribonuclease P activity. Predicted to be involved in tRNA 5'-leader removal. Predicted to be part of multimeric ribonuclease P complex. Predicted to be active in fibrillar center. Orthologous to human RPP38 (ribonuclease P/MRP subunit p38). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rpp38 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (28592495..28594188, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (28657872..28659565, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 171 member A1 Neighboring gene N-myristoyltransferase 2 Neighboring gene acyl-CoA binding domain containing 7 Neighboring gene carnitine O-octanoyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RES complex is associated with intron definition and required for zebrafish early embryogenesis. Fernandez JP, et al. PLoS Genet, 2018 Jul. PMID 29969449, Free PMC Article
  2. Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes. Rosenblad MA, et al. Nucleic Acids Res, 2006. PMID 16998185, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ribonuclease P RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to ribonuclease P activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribonuclease P activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA 5'-leader removal IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in fibrillar center IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of multimeric ribonuclease P complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
  
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribonuclease P protein subunit p38
NP_001002525.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002525.2 → NP_001002525.2  ribonuclease P protein subunit p38

    Status: VALIDATED

    Source sequence(s)
    BX322614
    UniProtKB/TrEMBL
    A0A8M1N0K8, F1QS85
    Related
    ENSDARP00000059052.3, ENSDART00000059053.4
    Conserved Domains (1) summary
    pfam01248
    Location:104 → 178
    Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    28592495..28594188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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