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taf11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Danio rerio (zebrafish) ]

Gene ID: 436821, updated on 28-Oct-2024

Summary

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Official Symbol
taf11provided by ZNC
Official Full Name
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-283
See related
Ensembl:ENSDARG00000037855 AllianceGenome:ZFIN:ZDB-GENE-040718-283
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92784
Summary
Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is expressed in telencephalon. Orthologous to human TAF11 (TATA-box binding protein associated factor 11). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
human mouse all
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Genomic context

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See taf11 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (309130..313814)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (296316..300777)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene PDZ domain-containing protein 4 Neighboring gene ankyrin repeat and SAM domain-containing protein 1A Neighboring gene bridge-like lipid transfer protein family member 3A Neighboring gene adaptor related protein complex 4 subunit beta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to RNA polymerase II general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002548.1 → NP_001002548.1  transcription initiation factor TFIID subunit 11

    See identical proteins and their annotated locations for NP_001002548.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076258
    UniProtKB/TrEMBL
    Q6DGT1
    Related
    ENSDARP00000121547.1, ENSDART00000134556.3
    Conserved Domains (2) summary
    COG5251
    Location:24 → 200
    TAF40; Transcription initiation factor TFIID, subunit TAF11 [Transcription]
    pfam04719
    Location:103 → 187
    TAFII28; hTAFII28-like protein conserved region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    309130..313814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005161895.4 → XP_005161952.1  transcription initiation factor TFIID subunit 11 isoform X1

    See identical proteins and their annotated locations for XP_005161952.1

    UniProtKB/TrEMBL
    A0A8M2B8S9, A8KBY5
    Related
    ENSDARP00000055151.3, ENSDART00000055152.4
    Conserved Domains (1) summary
    pfam04719
    Location:103 → 187
    TAFII28; hTAFII28-like protein conserved region

  2. XM_068216727.1 → XP_068072828.1  transcription initiation factor TFIID subunit 11 isoform X1

  3. XM_021469778.2 → XP_021325453.1  transcription initiation factor TFIID subunit 11 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B8S9, A8KBY5
    Conserved Domains (1) summary
    pfam04719
    Location:103 → 187
    TAFII28; hTAFII28-like protein conserved region
Nucleotide Protein
Heading Accession and Version

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