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rida reactive intermediate imine deaminase A homolog [ Danio rerio (zebrafish) ]

Gene ID: 436849, updated on 18-Sep-2024

Summary

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Official Symbol
ridaprovided by ZNC
Official Full Name
reactive intermediate imine deaminase A homologprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040718-315
See related
Ensembl:ENSDARG00000035882 AllianceGenome:ZFIN:ZDB-GENE-040718-315
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hrsp12; zgc:92739; zgc:101025
Summary
Predicted to enable deaminase activity. Predicted to be involved in organonitrogen compound catabolic process. Predicted to be active in cytosol and mitochondrion. Orthologous to human RIDA (reactive intermediate imine deaminase A homolog). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See rida in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (32822218..32838973)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (33235098..33251853)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase, cytosolic IAa Neighboring gene uncharacterized LOC137488532 Neighboring gene serine/threonine kinase 3 (STE20 homolog, yeast) Neighboring gene si:dkey-284p5.3 Neighboring gene uncharacterized LOC137488533

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC101025

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2-iminobutanoate/2-iminopropanoate deaminase IEA
Inferred from Electronic Annotation
more info
  
enables deaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
2-iminobutanoate/2-iminopropanoate deaminase
Names
endoribonuclease L-PSP
heat-responsive protein 12
NP_001002576.2
NP_001012315.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002576.3 → NP_001002576.2  2-iminobutanoate/2-iminopropanoate deaminase isoform 2

    See identical proteins and their annotated locations for NP_001002576.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and 5' coding region compared to variant 1. The resulting protein (isoform 2) is shorter and has a distinct N-terminus compared to isoform 1.
    Source sequence(s)
    BX293540, CR749175
    UniProtKB/TrEMBL
    A0A8M1N0W5, Q3B7E4
    Related
    ENSDARP00000052095.5, ENSDART00000052096.6
    Conserved Domains (1) summary
    cl10015
    Location:5 → 126
    YjgF_YER057c_UK114_family; YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no ...

  2. NM_001012315.2 → NP_001012315.1  2-iminobutanoate/2-iminopropanoate deaminase isoform 1

    See identical proteins and their annotated locations for NP_001012315.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BX293540, CR749175
    UniProtKB/TrEMBL
    A0A8M1N414, Q6AXL2
    Related
    ENSDARP00000052096.3, ENSDART00000052097.5
    Conserved Domains (1) summary
    TIGR00004
    Location:6 → 128
    TIGR00004; reactive intermediate/imine deaminase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    32822218..32838973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395055.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    280241..292162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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