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pabir2 PABIR family member 2 [ Danio rerio (zebrafish) ]

Gene ID: 445072, updated on 2-Nov-2024

Summary

Official Symbol
pabir2provided by ZNC
Official Full Name
PABIR family member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-204
See related
Ensembl:ENSDARG00000036500 AllianceGenome:ZFIN:ZDB-GENE-040801-204
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fam122b; zgc:91872
Summary
Predicted to enable protein serine/threonine phosphatase inhibitor activity. Orthologous to several human genes including PABIR1 (PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See pabir2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (31529558..31546577)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (31189180..31206263)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene hypoxanthine phosphoribosyltransferase 1 Neighboring gene microRNA 457b Neighboring gene small nucleolar RNA U109 Neighboring gene small nucleolar RNA U109 Neighboring gene motile sperm domain containing 1 Neighboring gene integrator complex subunit 6 like

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables protein serine/threonine phosphatase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM122B
Names
family with sequence similarity 122B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003466.2NP_001003466.2  protein FAM122B

    Status: VALIDATED

    Source sequence(s)
    BX511227
    Related
    ENSDARP00000053025.3, ENSDART00000053026.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    31529558..31546577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173206.4XP_005173263.1  protein FAM122B isoform X1

    UniProtKB/TrEMBL
    A0A8M2BKI5, Q6DBU0
  2. XM_005173207.4XP_005173264.1  protein FAM122B isoform X2

    UniProtKB/TrEMBL
    A0A8M2BKI8, Q6DBU0

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394915.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    85678..102681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)