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tmem60 transmembrane protein 60 [ Danio rerio (zebrafish) ]

Gene ID: 445087, updated on 2-Nov-2024

Summary

Official Symbol
tmem60provided by ZNC
Official Full Name
transmembrane protein 60provided by ZNC
Primary source
ZFIN:ZDB-GENE-040801-222
See related
Ensembl:ENSDARG00000021589 AllianceGenome:ZFIN:ZDB-GENE-040801-222
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:91811
Summary
Predicted to be located in membrane. Orthologous to human TMEM60 (transmembrane protein 60). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See tmem60 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (21277478..21280584, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (21179824..21182893, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 1a Neighboring gene fibrinogen-like 2b Neighboring gene inner mitochondrial membrane peptidase subunit 2 Neighboring gene leucine rich repeat neuronal 3a Neighboring gene uncharacterized LOC137489352

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003481.2NP_001003481.1  transmembrane protein 60

    See identical proteins and their annotated locations for NP_001003481.1

    Status: VALIDATED

    Source sequence(s)
    CR384055, EH549068, EH549323, EH570190
    UniProtKB/TrEMBL
    A0A8M1N177, Q6DBS7
    Related
    ENSDARP00000123646.1, ENSDART00000143644.2
    Conserved Domains (1) summary
    pfam10269
    Location:25134
    Tmemb_185A; Transmembrane Fragile-X-F protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    21277478..21280584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395200.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    92741..95889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)