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zgc:92161 zgc:92161 [ Danio rerio (zebrafish) ]

Gene ID: 447817, updated on 28-Oct-2024

Summary

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Official Symbol
zgc:92161provided by ZNC
Official Full Name
zgc:92161provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-22
See related
Ensembl:ENSDARG00000101749 AllianceGenome:ZFIN:ZDB-GENE-040912-22
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable oxidoreductase activity. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See zgc:92161 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (49043917..49058326)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (44898506..44912915)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene finTRIM family, member 94 Neighboring gene zgc:163083 Neighboring gene si:dkey-66l17.4 Neighboring gene zgc:112146

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables oxidoreductase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC447817

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004556.2 → NP_001004556.2  uncharacterized protein LOC447817

    Status: VALIDATED

    Source sequence(s)
    BX784040, EH459783, EH484407
    UniProtKB/TrEMBL
    A0A0R4IXF5, A0A8M1N1V4
    Related
    ENSDARP00000139644.1, ENSDART00000158212.2
    Conserved Domains (2) summary
    cd05325
    Location:9 → 258
    carb_red_sniffer_like_SDR_c; carbonyl reductase sniffer-like, classical (c) SDRs
    pfam00106
    Location:8 → 220
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    49043917..49058326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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