cavin2b caveolae associated protein 2b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cavin2bprovided by ZNC
Official Full Name: caveolae associated protein 2bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040912-149
See related: Ensembl:ENSDARG00000071196 AllianceGenome:ZFIN:ZDB-GENE-040912-149
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sdprb; zgc:92231; wu:fb39c08; wu:fk90b02
Summary: Predicted to enable protein kinase C binding activity. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in several structures, including EVL; epidermis; hypochord; nervous system; and periderm. Orthologous to several human genes including CAVIN2 (caveolae associated protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 6

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	6	NC_007117.7 (8707812..8736767, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	6	NC_007117.6 (8472273..8501228, complement)

Chromosome 6 - NC_007117.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G39278 (e-PCR)
- UniSTS:55056

fc85f12.y1 (e-PCR)
- UniSTS:194660

fb39c08.x1 (e-PCR)
- UniSTS:203187

fk90b02.x1 (e-PCR)
- UniSTS:201691

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables protein kinase C binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in caveola	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: caveolae-associated protein 2b

Names: serum deprivation response b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001004584.1 → NP_001004584.2 caveolae-associated protein 2b

Status: PROVISIONAL

Source sequence(s)

BC081627

UniProtKB/TrEMBL

A0A8M1N248, F1R665, Q66HY0

Related

ENSDARP00000121255.1, ENSDART00000143956.2

Conserved Domains (1) summary

pfam15237
Location:78 → 326

PTRF_SDPR; PTRF/SDPR family