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zgc:92140 zgc:92140 [ Danio rerio (zebrafish) ]

Gene ID: 447854, updated on 17-Sep-2024

Summary

Official Symbol
zgc:92140provided by ZNC
Official Full Name
zgc:92140provided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-161
See related
Ensembl:ENSDARG00000098592 AllianceGenome:ZFIN:ZDB-GENE-040912-161
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human C1orf21 (chromosome 1 open reading frame 21). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See zgc:92140 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (19401085..19467167, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (19370668..19437155, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene macrophage expressed 1, tandem duplicate 2 Neighboring gene collagen beta(1-O)galactosyltransferase 2b Neighboring gene ER degradation enhancer, mannosidase alpha-like 3 Neighboring gene N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC447854

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004593.1NP_001004593.1  uncharacterized protein LOC447854

    See identical proteins and their annotated locations for NP_001004593.1

    Status: PREDICTED

    Source sequence(s)
    BC081606
    UniProtKB/TrEMBL
    A0A0R4ILD0, A0A2R8QN91, Q66I00
    Related
    ENSDARP00000134738.1, ENSDART00000162010.3
    Conserved Domains (1) summary
    pfam15389
    Location:2112
    DUF4612; Domain of unknown function (DUF4612)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    19401085..19467167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009303890.4XP_009302165.1  uncharacterized protein LOC447854 isoform X1

    See identical proteins and their annotated locations for XP_009302165.1

    UniProtKB/TrEMBL
    A0A0R4ILD0, A0A2R8QN91, Q66I00
    Conserved Domains (1) summary
    pfam15389
    Location:2112
    DUF4612; Domain of unknown function (DUF4612)
  2. XM_068222931.1XP_068079032.1  uncharacterized protein LOC447854 isoform X1

  3. XM_009303892.4XP_009302167.1  uncharacterized protein LOC447854 isoform X1

    See identical proteins and their annotated locations for XP_009302167.1

    UniProtKB/TrEMBL
    A0A0R4ILD0, A0A2R8QN91, Q66I00
    Related
    ENSDARP00000157014.1, ENSDART00000184037.1
    Conserved Domains (1) summary
    pfam15389
    Location:2112
    DUF4612; Domain of unknown function (DUF4612)